Cristian Daniel Quiroz-Moreno

PhD. candidate at the Cooperstone lab

Making publication-ready MS/MS mirror plots

A step-by-step tutorial for creating MS/MS mirror plots in R

This post shows how to create beatiful mirror plots to compare experimental vs reference MS/MS fragementation pattern with a slight focus on metabolomics.

MS2extract Part 4 - Using MSconvert to filter useful MS/MS data

Using MSconvert to convert and crop MS/MS data

In this post we are going to explain how you can use MSconvert to crop specific parts of your MS/MS run to preserve only the MS/MS scans of your reference material

MS2extract Part 3 - Behind the curtains of importing MS/MS data

Describing how MS2extract imports and handles MS/MS data

In this post we are going to explain how we import, calculate error mass, and filter scans in MS2extract

MS2extract Part 2 - Using the MS2extract batch pipeline

Automating MS/MS library creation with MS2extract batch mode

In this post, we will go over about how to automate the process of creating your in-house MS/MS library using the batch functions in MS2extract

Using ms-mint for targeted peak integration of Mass Spec data

Using ms-mint for targeted peak integration

In this post, we will use ms-mint with the objective of integrated peak areas of identified phytochemicals present in apples